Click on the names to visit respective website.
| Rank | Name | Established In | Courses Offered |
|---|---|---|---|
| 1. | Jawaharlal Nehru Centre for Advanced Scientific Research (JNCASR), Bangalore | 1989 | IPh. D., PhD,M. S. / M. S. (Engg.) |
| 2. | Raman Research Institute (RRI), Banglore | PhD | |
| 3. | S.N. Bose National Centre for Basic Sciences, Kolkata | 1986 | IPhD,PhD. |
| 4. | Aryabhatta Research Institute of Observational-Sciences (ARIES), Nainital | 1954 | Integrated M.Tech-PhD,PhD. |
| 5. | Centre for Nano and Soft Matter Sciences, Bangalore | 1991 | PhD |
| 6. | International Advanced Research Centre for Powder Metallurgy and New Materials, Hyderabad | 1997 | PhD |
| 7. | Indian Association for the Cultivation of Science, Kolkata | 1876 | PhD |
| 8. | Institute of Nano Science and Technology, Mohali | 2001 | PhD |
| 9. | Indian Institute of Astrophysics, Bangalore | 1971 | PhD |
| 10. | Indian Institute of Geomagnetism, Mumbai | 1971 | PhD |
| 11. | The Institute of Advanced Study in Science & Technology, Guwahati |